Class: Observation

An observation made by a workflow on the sequencing files of a biological sample. The observation is one measure among many made the workflow on the sequencing files.

URI: sosa:Observation

 classDiagram
    class Observation
    click Observation href "../Observation/"
      Observation : hasFeatureOfInterest





        Observation --> "0..1" Gene : hasFeatureOfInterest
        click Gene href "../Gene/"



      Observation : hasSimpleResult

      Observation : isAbout





        Observation --> "0..1" Sample : isAbout
        click Sample href "../Sample/"



      Observation : observedProperty





        Observation --> "0..1" ObservableProperty : observedProperty
        click ObservableProperty href "../ObservableProperty/"



      Observation : resultTime

      Observation : usedProcedure





        Observation --> "0..1" Procedure : usedProcedure
        click Procedure href "../Procedure/"



      Observation : wasGeneratedBy





        Observation --> "0..1" Procedure : wasGeneratedBy
        click Procedure href "../Procedure/"

Slots

Name	Cardinality and Range	Description	Inheritance
isAbout	0..1 Sample	Indicates that the observation has been made about a certain sample	direct
observedProperty	0..1 ObservableProperty	A property of interest measured by the workflow on the seqencing file	direct
usedProcedure	0..1 Procedure	A relation to link to a re-usable Procedure used in making an Observation	direct
wasGeneratedBy	0..1 Procedure	Generation is the completion of production of a new entity by an activity	direct
resultTime	0..1 Datetime	The result time is the instant of time when the Observation was completed	direct
hasSimpleResult	0..1 String or NONE or NONE	The simple value of an Observation	direct
hasFeatureOfInterest	0..1 Gene	A relation between an Observation and the entity whose quality was observed	direct

Usages

used by	used in	type	used
Sample	isSubjectOf	range	Observation

Identifier and Mapping Information

Schema Source

from schema: https://10-54-3-233.gcp.glicid.fr

Mappings

Mapping Type	Mapped Value
self	sosa:Observation
native	https://10-54-3-233.gcp.glicid.fr/Observation
related	sio:000000

LinkML Source

Direct

name: Observation
description: An observation made by a workflow on the sequencing files of a biological
  sample. The observation is one measure among many made the workflow on the sequencing
  files.
from_schema: https://10-54-3-233.gcp.glicid.fr
related_mappings:
- sio:000000
attributes:
  isAbout:
    name: isAbout
    description: Indicates that the observation has been made about a certain sample
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sio:000332
    domain_of:
    - Observation
    range: Sample
    multivalued: false
  observedProperty:
    name: observedProperty
    description: A property of interest measured by the workflow on the seqencing
      file. It answers to the questions "what is the metric that has been measured
      ?". An example of observed property can be the a gene identity % or a specific
      quality metric for instance
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:observedProperty
    domain_of:
    - Observation
    range: ObservableProperty
    multivalued: false
  usedProcedure:
    name: usedProcedure
    description: A relation to link to a re-usable Procedure used in making an Observation
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:usedProcedure
    domain_of:
    - Observation
    range: Procedure
    multivalued: false
  wasGeneratedBy:
    name: wasGeneratedBy
    description: Generation is the completion of production of a new entity by an
      activity. This entity did not exist before generation and becomes available
      for usage after this generation.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    domain_of:
    - Observation
    range: Procedure
    multivalued: false
  resultTime:
    name: resultTime
    description: The result time is the instant of time when the Observation was completed.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:resultTime
    domain_of:
    - Observation
    range: datetime
    multivalued: false
  hasSimpleResult:
    name: hasSimpleResult
    description: The simple value of an Observation
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:hasSimpleResult
    domain_of:
    - Observation
    multivalued: false
    exactly_one_of:
    - range: xsd:string
    - range: xsd:decimal
  hasFeatureOfInterest:
    name: hasFeatureOfInterest
    description: A relation between an Observation and the entity whose quality was
      observed
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:hasFeatureOfInterest
    domain_of:
    - Observation
    range: Gene
    multivalued: false
class_uri: sosa:Observation

Induced

name: Observation
description: An observation made by a workflow on the sequencing files of a biological
  sample. The observation is one measure among many made the workflow on the sequencing
  files.
from_schema: https://10-54-3-233.gcp.glicid.fr
related_mappings:
- sio:000000
attributes:
  isAbout:
    name: isAbout
    description: Indicates that the observation has been made about a certain sample
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sio:000332
    alias: isAbout
    owner: Observation
    domain_of:
    - Observation
    range: Sample
    multivalued: false
  observedProperty:
    name: observedProperty
    description: A property of interest measured by the workflow on the seqencing
      file. It answers to the questions "what is the metric that has been measured
      ?". An example of observed property can be the a gene identity % or a specific
      quality metric for instance
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:observedProperty
    alias: observedProperty
    owner: Observation
    domain_of:
    - Observation
    range: ObservableProperty
    multivalued: false
  usedProcedure:
    name: usedProcedure
    description: A relation to link to a re-usable Procedure used in making an Observation
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:usedProcedure
    alias: usedProcedure
    owner: Observation
    domain_of:
    - Observation
    range: Procedure
    multivalued: false
  wasGeneratedBy:
    name: wasGeneratedBy
    description: Generation is the completion of production of a new entity by an
      activity. This entity did not exist before generation and becomes available
      for usage after this generation.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    alias: wasGeneratedBy
    owner: Observation
    domain_of:
    - Observation
    range: Procedure
    multivalued: false
  resultTime:
    name: resultTime
    description: The result time is the instant of time when the Observation was completed.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:resultTime
    alias: resultTime
    owner: Observation
    domain_of:
    - Observation
    range: datetime
    multivalued: false
  hasSimpleResult:
    name: hasSimpleResult
    description: The simple value of an Observation
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:hasSimpleResult
    alias: hasSimpleResult
    owner: Observation
    domain_of:
    - Observation
    multivalued: false
    exactly_one_of:
    - range: xsd:string
    - range: xsd:decimal
  hasFeatureOfInterest:
    name: hasFeatureOfInterest
    description: A relation between an Observation and the entity whose quality was
      observed
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sosa:hasFeatureOfInterest
    alias: hasFeatureOfInterest
    owner: Observation
    domain_of:
    - Observation
    range: Gene
    multivalued: false
class_uri: sosa:Observation