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Class: Sample

A sample containing some sort of biological material

URI: sio:001050

 classDiagram
    class Sample
    click Sample href "../Sample/"
      Sample : atLocation





        Sample --> "*" Region : atLocation
        click Region href "../Region/"



      Sample : generatedAtTime

      Sample : host





        Sample --> "*" CellularOrganism : host
        click CellularOrganism href "../CellularOrganism/"



      Sample : inTaxon





        Sample --> "*" CellularOrganism : inTaxon
        click CellularOrganism href "../CellularOrganism/"



      Sample : isPartOf





        Sample --> "0..1" SampleType : isPartOf
        click SampleType href "../SampleType/"



      Sample : isSubjectOf





        Sample --> "*" Observation : isSubjectOf
        click Observation href "../Observation/"



      Sample : wasAttributedTo

      Sample : wasDerivedFrom





        Sample --> "*" SampleSource : wasDerivedFrom
        click SampleSource href "../SampleSource/"

Slots

Name Cardinality and Range Description Inheritance
host *
CellularOrganism		 Indicates the host specie the sample has been collected from direct
wasDerivedFrom *
SampleSource		 Indicates the physical biological object that has been collected in the sampl... direct
atLocation *
Region		 Indicates the region where the sample has been collected direct
wasAttributedTo *
String or 
Sensor or 
Person or 
Agent		 Indicates the sequencer used to observe the biological sample leading to the ... direct
inTaxon *
CellularOrganism		 Indicates the taxons present in the sample direct
generatedAtTime 0..1
Datetime		 Indicates the exact time and date when the sample has been collected direct
isSubjectOf *
Observation		 Indicates the observations performed by a workflow on the biological samples'... direct
isPartOf 0..1
SampleType		 Indicates the type of the sample direct

Usages

used by used in type used
Observation isAbout range Sample

Identifier and Mapping Information

Schema Source

  • from schema: https://10-54-3-233.gcp.glicid.fr

Mappings

Mapping Type Mapped Value
self sio:001050
native https://10-54-3-233.gcp.glicid.fr/Sample
exact prov:Entity, sio:000000

LinkML Source

Direct

name: Sample
description: A sample containing some sort of biological material
from_schema: https://10-54-3-233.gcp.glicid.fr
exact_mappings:
- prov:Entity
- sio:000000
attributes:
  host:
    name: host
    description: Indicates the host specie the sample has been collected from. In
      the case of a sample collected in the environement, when there is no host specie,
      this field is should be ignored.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: uniprot-core:host
    domain_of:
    - Sample
    range: CellularOrganism
    multivalued: true
  wasDerivedFrom:
    name: wasDerivedFrom
    description: Indicates the physical biological object that has been collected
      in the sample. It can be an anatomical structure, like a certain organ or a
      physical object such as soil for environemental samples.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:wasDerivedFrom
    domain_of:
    - Sample
    range: SampleSource
    multivalued: true
  atLocation:
    name: atLocation
    description: Indicates the region where the sample has been collected. It can
      be any sub class of wikidata region, including a specific country, state or
      any other wikidata geographical location.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:atLocation
    domain_of:
    - Sample
    range: Region
    multivalued: true
  wasAttributedTo:
    name: wasAttributedTo
    description: Indicates the sequencer used to observe the biological sample leading
      to the generation of the raw sequence files from the biological sample or indicates
      the person that collected the biological sample
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:wasAttributedTo
    domain_of:
    - Sample
    multivalued: true
    exactly_one_of:
    - range: Sensor
    any_of:
    - range: Person
    - range: Agent
  inTaxon:
    name: inTaxon
    description: Indicates the taxons present in the sample.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: obo:RO_0002162
    domain_of:
    - Sample
    range: CellularOrganism
    multivalued: true
  generatedAtTime:
    name: generatedAtTime
    description: Indicates the exact time and date when the sample has been collected
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:generatedAtTime
    domain_of:
    - Sample
    range: datetime
    multivalued: false
  isSubjectOf:
    name: isSubjectOf
    description: Indicates the observations performed by a workflow on the biological
      samples' sequence files
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sio:000629
    domain_of:
    - Sample
    range: Observation
    multivalued: true
  isPartOf:
    name: isPartOf
    description: Indicates the type of the sample
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sio:000068
    domain_of:
    - Sample
    range: SampleType
    multivalued: false
class_uri: sio:001050

Induced

name: Sample
description: A sample containing some sort of biological material
from_schema: https://10-54-3-233.gcp.glicid.fr
exact_mappings:
- prov:Entity
- sio:000000
attributes:
  host:
    name: host
    description: Indicates the host specie the sample has been collected from. In
      the case of a sample collected in the environement, when there is no host specie,
      this field is should be ignored.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: uniprot-core:host
    alias: host
    owner: Sample
    domain_of:
    - Sample
    range: CellularOrganism
    multivalued: true
  wasDerivedFrom:
    name: wasDerivedFrom
    description: Indicates the physical biological object that has been collected
      in the sample. It can be an anatomical structure, like a certain organ or a
      physical object such as soil for environemental samples.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:wasDerivedFrom
    alias: wasDerivedFrom
    owner: Sample
    domain_of:
    - Sample
    range: SampleSource
    multivalued: true
  atLocation:
    name: atLocation
    description: Indicates the region where the sample has been collected. It can
      be any sub class of wikidata region, including a specific country, state or
      any other wikidata geographical location.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:atLocation
    alias: atLocation
    owner: Sample
    domain_of:
    - Sample
    range: Region
    multivalued: true
  wasAttributedTo:
    name: wasAttributedTo
    description: Indicates the sequencer used to observe the biological sample leading
      to the generation of the raw sequence files from the biological sample or indicates
      the person that collected the biological sample
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:wasAttributedTo
    alias: wasAttributedTo
    owner: Sample
    domain_of:
    - Sample
    multivalued: true
    exactly_one_of:
    - range: Sensor
    any_of:
    - range: Person
    - range: Agent
  inTaxon:
    name: inTaxon
    description: Indicates the taxons present in the sample.
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: obo:RO_0002162
    alias: inTaxon
    owner: Sample
    domain_of:
    - Sample
    range: CellularOrganism
    multivalued: true
  generatedAtTime:
    name: generatedAtTime
    description: Indicates the exact time and date when the sample has been collected
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: prov:generatedAtTime
    alias: generatedAtTime
    owner: Sample
    domain_of:
    - Sample
    range: datetime
    multivalued: false
  isSubjectOf:
    name: isSubjectOf
    description: Indicates the observations performed by a workflow on the biological
      samples' sequence files
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sio:000629
    alias: isSubjectOf
    owner: Sample
    domain_of:
    - Sample
    range: Observation
    multivalued: true
  isPartOf:
    name: isPartOf
    description: Indicates the type of the sample
    from_schema: https://10-54-3-233.gcp.glicid.fr
    rank: 1000
    slot_uri: sio:000068
    alias: isPartOf
    owner: Sample
    domain_of:
    - Sample
    range: SampleType
    multivalued: false
class_uri: sio:001050